transition 2 and stabilization processes to 3 speciation is a function of the ancestral trait state and selective 4 environment in Hakea
Journal Article


Currently the origin and trajectories of novel traits are emphasised in evolutionary studies, the

role of stabilization is neglected, and interpretations are often post hoc rather than as

hypothesised responses to stated agents of selection. Here we evaluated the impact of

changing environmental conditions on trait evolution and stabilization and their relative

contribution to diversification in a prominent Australian genus, Hakea (Proteaceae). We

assembled a time-based phylogeny for Hakea, reconstructed its ancestral traits for six

attributes and determined their evolutionary trajectories in response to the advent or

increasing presence of fire, seasonality, aridity, nectar-feeding birds and (in)vertebrate

herbivores/granivores. The ancestral Hakea arose 18 million years ago (Ma) and was broad

leaved, non-spinescent, insect-pollinated, had medium-sized, serotinous fruits and resprouted

after fire. Of the 190 diversification events that yielded the 82 extant species analysed, 8−50%

involved evolution, stabilization or re-evolution (reversal) of individual novel traits.

شهوب محممد أمحمد الأحمر, Byron B. Lamont, (10-2017), استراليا: تم اختياره bioRxiv Journal, 1 (10), 1-33


Shhoob Mohmad Amhemed Elahmir, (10-2017), bioRxiv Journal,: bioRxiv Journal,, 1 (10), 1-33

Small-seeded Hakea species tolerate cotyledon loss better than large-seeded congeners
Journal Article

Six Hakea species varying greatly in seed size were selected for cotyledon damage experiments. The

growth of seedlings with cotyledons partially or completely removed was monitored over 90 days. All

seedlings perished by the fifth week when both cotyledons were removed irrespective of seed size.

Partial removal of cotyledons caused a significant delay in the emergence of the first leaf, and reduction

in root and shoot growth of the large-seeded species. The growth of seedlings of small-seeded species

was less impacted by cotyledon damage. The rate of survival, root and shoot lengths and dry biomass

of the seedlings were determined after 90 days. When seedlings were treated with balanced nutrient

solutions following removal of the cotyledons, survival was 95–98%, but 0% when supplied with

nutrient solutions lacking N or P or with water only. The addition of a balanced nutrient solution failed

to restore complete growth of any species, but the rate of root elongation for the small-seeded species

was maintained. Cotyledons provide nutrients to support early growth of Hakea seedlings, but other

physiological roles for the cotyledons are also implicated. In conclusion, small-seeded Hakea species can

tolerate cotyledons loss better than large-seeded species.




Shhoob Mohmad Amhemed Elahmir, (01-2017), Scientific Reports: Scientific Reports, 7 (1), 1-9

The Impact of Water and Some Salt Solutions on Some Properties of Hydrophilic Acrylamide Copolymeric Hydrogels
Journal Article

Abstract-A series of polyelectrolyte hydrogels ranging from 92-98wt% were synthesized by copolymerization of acrylamide,

AAM with 2-acrylamido-2-methyl propane sulphonic acid, AMPS using 0.001g APS as initiator in the presence of 30wt% H2O

and 1.0wt% ethylene glycol dimethacrylate,EDMA as cross-linking agent. The final copolymers was obtained in the form of

glassy and transparent roads at room temperature, these roads were soaked in water for two days to remove unreacted

monomers. The swelling behavior of the hydrogels was studied in distilled water and salt solutions of 1.5 mol/l each of NaCl

and KCl. The Swelling in water shows decreasing values of q, LE, Ø1, EWC% and increasing polymer volume fraction, Ø2 by

increasing acrylamide, due to increasing hydrophobicity and decreasing the hydrophilicity. The swelling in salt solutions

shows a decreasing in the values of ESSNa%, WCNa%, SCNa%, ESSK%, WCK% and SCK% by increasing acrylamid

monomer in the feed due to increasing the hydrophobicity and decreasing the ionized ionic groups (SO3H). The increasing

values of ESSNa%, WCNa% and SCNa% compared with the values of ESSK%, WCK% and SCK% respectively, is due to

the higher charge density of sodium ion than that of potassium ion.



Shhoob Mohmad Amhemed Elahmir, Abdurhman A.Abuabdalla Khalifa, (01-2017), MAYFEB Journal of Materials Science: MAYFEB Journal of Materials Science, 1 (1), 7-16

Livestock hydatid disease (cystic hydatidosis ) in Libya. A review
Journal Article

infected organs mainly liver and lungs and to some extent other organs including spleen, kidneys, heart, brain and bones of the animal carcasses. Prevention of cystic hydatid disease primarily focusing on veterinary investigations for controlling the extent and the intensity of echinococcosis in the definitive host populations, which indirectly may lead to control the prevalence of hydatid disease in the intermediate host animals. Treatment of cystic hydatidosis in livestock is still under investigation but anti-helminthes drugs can be used. Regular treatment, taking high degree of precautions when handling pets or dealing with animal meat must be taken into consideration to minimize the level of infection and egg excretion as well as the vaccination of ruminant intermediate hosts, are all in evaluation.

Mostafa Mohamed Omar Abdoarrahem, (05-2016), American Journal of Animal and Veterinary Sciences: https://doi.org/10.3844/ajavsp.2016.70.84, 11 (2), 70-84

Germination genes of Bacillus thuringiensis subsp. Israelensis.
Book

Bacillus thuringiensis subsp. israelensis is the most important biological insecticide for the control of mosquito vectors of disease. This bacterium produces toxins during sporulation that cause larval death by lysis of cells in their midgut. The pBtoxis plasmid of B. thuringiensis subsp. israelensis encodes all the mosquitocidal toxins and a number of other coding sequences. The plasmid also carries potential germination genes organised in a single ger operon. Comparison of the germination responses of spores from strains with and without pBtoxis revealed that this plasmid could promote activation of the spores under alkaline conditions but not following heat treatment. Introduction of the ger operon on a recombinant plasmid to the plasmidless strain established this operon as the first with an identified role in alkaline activation.

Mostafa Mohamed Omar Abdoarrahem, (06-2015), Germany: LAP Lambert Academic Publishing.,

Seed Size, Fecundity and Postfire Regeneration Strategy Are Interdependent in Hakea
Journal Article

Seed size is a key functional trait that affects plant fitness at the seedling stage and may

vary greatly with species fruit size, growth form and fecundity. Using structural equation

modelling (SEM) and correlated trait evolution analysis, we investigated the interaction network

between seed size and fecundity, postfire regeneration strategy, fruit size, plant height

and serotiny (on-plant seed storage) among 82 species of the woody shrub genus, Hakea,

with a wide spectrum of seed sizes (2–500 mg). Seed size is negatively correlated with fecundity,

while fire-killed species (nonsprouters) produce more seeds than resprouters

though they are of similar size. Seed size is unrelated to plant height and level of serotiny

while it scales allometrically with fruit size. A strong phylogenetic signal in seed size revealed

phylogenetic constraints on seed size variation in Hakea. Our analyses suggest a

causal relationship between seed size, fecundity and postfire regeneration strategy in

Hakea. These results demonstrate that fruit size, fecundity and evolutionary history have

had most control over seed size variation among Hakea species.

Shhoob Mohamed imhmed Elahmir, (06-2015), UNITED STATES: journal.pone, 1 (1371), 1-12


Shhoob Mohmad Amhemed Elahmir, (06-2015), journal.pone,: journal.pone,, 1 (1371), 1-12

Regulatory aspects of innate immune responses
PhD Thesis

Activation of innate immunity is regulated by a variety of signaling molecules within

the immune cells. The present thesis was aimed to improve our understanding

innate signaling mechanism and their possible use as bio-indicators of exposure and

disease. The first part of the thesis deals with the involvement of TOM1L1 (Target

of Myb1 like 1) in innate immune signaling and regulation of inflammatory cytokines

in immune cells (study I and II). The initial event of T-cells activation depend

on the recruitment of Src family kinases Fyn and Lck, leading to interleukine-2 (IL-

2) production in T cells. Understanding the regulatory aspects of IL-2 induction in

T-cells is of importance as IL-2 is a key regulator for T-cell proliferation and survival.

Interaction screening indicated the ability of TOM1L1 protein to interact with

Fyn, and Lck, that is important for IL-2 production in Jurkat T-cells. TOM1L1

silencing decreased the levels of CD3/CD28 dependent induction of IL-2 in Jurkat

T-cells, and LPS dependent induction of TNF-α in THP-1. Furthermore, overexpression

of TOM1L1 in Jurkat T-cells causes an increase of STAT3 expression. This

was accompanied by an increase in the levels of IL-1β dependent induction of IL-6

and TNF-α in THP-1 cells. These results indicate that TOM1L11 participate in

regulation of innate immune response. The second part of the thesis deals with

development of innate immune signaling responses used as a diagnosis tools for

disease and exposure (study III and IV). Inflammatory diseases are associated with

innate immune reactions. In response to inflammation, the immune cells release

inflammatory cytokines such as IL-1-β, IL-2, IL-6, IL-10, TNF-α and CXCL8. These

cytokines are regulated by stress related kinases include MAP kinase proteins such

as ERK1-2, JNK, and MAPK p38, through activation of transcription factors AP-1,

ATF-2, and NF-AT. In a clinical study, it was observed that activated MAPK p38

has a potential role in the regulation of IL-10 expression in intermittent claudication.

However, expression of IL-10 and MAPK p38 was opposed in stable angina

group. Therefore, targeting MAPK p38 in inflammatory disease such as cardiovascular

diseases, diabetes, and rheumatoid arthritis might be useful in development of

treatment strategies. Innate immune reactions can also be used to monitor stress

related inflammatory responses following environmental exposure of immune cells.

Inflammatory responses of exposure were studied by in vitro exposure to waters

from sewage treatment works and recipient waters. The analysis shows that exposure

to inland waters can result in activated immune responses and that these responses

are both site dependent and vary over time.

Keywords: Innate immunity, TOM1L1, inflammatory responses.

Ahmed Marwan Bashir Dabaag El Marghani, (09-2011), دولة السويد: Orebro University,

Genetic basis for alkaline activation of germination in Bacillus thuringiensis subsp. Israelensis
Journal Article

Differences in activation between spores from strains of Bacillus thuringiensis subsp. israelensis with and without the toxin-encoding plasmid pBtoxis are demonstrated. Following alkaline activation, the strain bearing pBtoxis shows a significantly greater germination rate. Expression of just three genes constituting a previously identified, putative ger operon from this plasmid is sufficient to produce the same phenotype and characterizes this operon as a genetic determinant of alkaline activation.

Mostafa Mohamed Omar Abdoarrahem, K Gammon, B N Dancer, Colin Bery, (10-2009), Applied and Environmental Microbiology: Applied and Environmental Microbiology, 75 (-19), 6410-6413

تصنيف النباتات المذكورة بالقران الكريم
مقال في مؤتمر علمي

تم تصنيف الانواع النباتية التي تم دكرها في القران الكريم

أشهوب محمد أمحمد الأحمر، (09-2009)، المؤثمر الثالث للعلوم الانسنية: المؤثمر الثالث للعلوم الانسنية، 19-22

حصر النباتات الزهرية بالجزء الشمالي من غريان
مقال في مؤتمر علمي

تم حصر 375 ننوع نباتي ، وإضافة خمسة انواع نباتات للفلورا النباتية، كما تم تحديد النباتات الطبية ، الرعوية و النادرة بالمنطقة

أشهوب محمد أمحمد الأحمر، محمد النوري أبوهدرة، (01-2008)، المجلة الليبية للعلوم: المجلة الليبية للعلوم، 196-213